PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596435.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 285aa    MW: 32210.1 Da    PI: 5.4205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
   XP_013596435.1 14 RGPWTPEEDQILISFIHKHGHSNWRALPKQAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding51.71.9e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_013596435.1  67 RGNFTKEEEDAIISLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.839961IPR017930Myb domain
SuperFamilySSF466896.6E-3111108IPR009057Homeodomain-like
SMARTSM007177.4E-151363IPR001005SANT/Myb domain
PfamPF002493.5E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251568IPR009057Homeodomain-like
CDDcd001675.24E-121661No hitNo description
PROSITE profilePS5129425.06462116IPR017930Myb domain
SMARTSM007177.3E-1566114IPR001005SANT/Myb domain
PfamPF002496.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2669116IPR009057Homeodomain-like
CDDcd001678.33E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCEKM GLNRGPWTPE EDQILISFIH KHGHSNWRAL PKQAGLLRCG KSCRLRWMNY  60
LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLEDYQ  120
LAKPKTSNTK KATKPKSQSV PTKLNSTRRE LEFLNSSNPS FESLLSASPS TSDAVSSVTL  180
MSHEGHNNEA KMDNKSGDIN IADQDCSSFE IFGADIDESF WNEALYSQDE SNYALNLDVA  240
GFDEIQQEFQ QLGPVENEMV FDSEMDFWFD VLARTGGEQD LLAGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121175109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596435.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0D3D5J70.0A0A0D3D5J7_BRAOL; Uncharacterized protein
STRINGBra014929.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-169myb domain protein 15